Ongoing projects:
E5 Deep Dive Expression manuscript
E5 Timeseries work – need to re-integrate, figure out my role/contribution
ceasmallr data analyses
SIFP data analyses.
Big goals for month of October:
DDE manuscript ready for submission
Summary presentation of SIFP work/results, ready for GSS and IZ No Bones talk
Masters Thesis Proposal sent to committee
Goals for first two weeks of October (10/1/25 - 10/17/25)
DDE manucript draft finished and sent to collaborators for feedback/edits
First draft of masters thesis proposal
SIFP:
figure out how to re-basecall data using .pod5 files (modified basecalling ofc)
figure out workflow (tools, parameters, etc.) for trimming (adapter, barcode, and quality), alignment, and DMR analysis.