September 2025, Goals

monthly goals
Author

Kathleen Durkin

Published

October 1, 2025

I’m writing this in the last few days of September, as the Fall 2025 quarter is starting. For the last ~1 week of September, my goals are as follows:

SIFP

  • Finish transcribing all SIFP lab notebook entries into digital lab notebook

  • Finish all SIFP file transfers, including checksum generation once folders are unzipped

  • Add links to full tapestation summaries once files are available on Gannet

  • Add links to sequencing run reports to all sequencing lab notebook entries, once files are fully available on Gannet

  • Compile summary stats on all MinION sequencing runs (# bases, # reads, avg. coverage, etc.)

  • Estimate contamination (e.g., fungal) in all sequencing runs, using Kraken

DDE

  • Figure out DDE figures – what’s the big takeaway(s) of the paper, and how can we best show that in ~3 figures.