September 2025, Goals

I’m writing this in the last few days of September, as the Fall 2025 quarter is starting. For the last ~1 week of September, my goals are as follows:

SIFP

• Finish transcribing all SIFP lab notebook entries into digital lab notebook

• Finish all SIFP file transfers, including checksum generation once folders are unzipped

• Add links to full tapestation summaries once files are available on Gannet

• Add links to sequencing run reports to all sequencing lab notebook entries, once files are fully available on Gannet

• Compile summary stats on all MinION sequencing runs (# bases, # reads, avg. coverage, etc.)

• Estimate contamination (e.g., fungal) in all sequencing runs, using Kraken

DDE

• Figure out DDE figures – what’s the big takeaway(s) of the paper, and how can we best show that in ~3 figures.