The P.meandrina miRdeep2 finished running!
A quick comparison of the different miRNA ID approaches for the three species we’ve been looking at:
| miRTrace | MirMachine | BLASTn (E-val=10) |
miRdeep2 | ShortStack | |
|---|---|---|---|---|---|
| A. pulchra (A.millepora for genome-based) |
lophotrochozoa, rodents, primates, | Predicted loci: 109 Unique families: 11 |
miRBase: 19,120,159 MirGene: 19,037,617 |
Predicted miRNAs: 4,553 Matches to known miRNAs: 4,137 Novel miRNAs: 416 |
Potential loci: 18,772 miRBase matches: 46 # characterized as miRNA: 0 |
| P. evermanni | insects | Predicted loci: 83 Unique familes: 15 |
miRBase: 8,824,359 MirGene: 8,783,659 |
Predicted miRNAs: 5,812 Matches to known miRNAS: 5,096 Novel miRNAs: 716 |
Potential loci: 15,040 miRBase matches: 25 # characterized as miRNA: 0 |
| P. meandrina | nematode, insects, lophotrochozoa, primates | Predicted loci: 40 Unique families: 7 |
miRBase: 13,708,946 MirGene: 13,614,786 |
Predicted miRNAs: 2,429 Matches to known miRNAs: 2,143 Novel miRNAs: 286 |
Potential loci: 7,306 miRBase matches: 86 # characterized as miRNA: 0 |