Opening an RStudio instance in Klone

misc
Author

Kathleen Durkin

Published

February 19, 2025

General instructions:

Open Cygwin (or other Unix tool)

ssh kdurkin1@klone.hyak.uw.edu

Enter UW NetID password and complete the DUO prompt

Once I’ve accessed Klone, I’m in the /mmfs1/home/kdurkin1 directory. All of the Roberts lab resources, however, are located in the /gscratch/srlab/ directory

cd /gscratch/srlab/

I have my own subdirectory, /gscratch/srlab/kdurkin1

To launch an RStudio server, run the .job file I have stored in my directory (edit if necessary using nano):

cd /gscratch/srlab/kdurkin1
sbatch rstudio-server-ckpt.job
cat *.out

Open the output file, follow instructions by opening the directed ssh tunnel and signing in via NetID, then opening a webpage at the provided web address

Resources

Potentially helpful commands:

hyakalloc : shows me what computational resources I have access to

squeue | grep kdurkin1 : shows what jobs I have running

Klone instructions (handbook)
Video walkthrough
My github issue troubleshooting this process