31 May 2024
Friday
E5 meeting
looking at figure options for E5
30 May 2024
Thursday
pubathon
editing blast parameters for miRNAs
fsh541, last class
lab meeting, prepping for hackathon
generating pairwise distance matrix to compare E5 miRNA sequence similarity and generate related figures
29 May 2024
Wednesday
GRFP info session
more work on id’ing conserved mirnas and investigating their database matches
28 May 2024
Tuesday
fsh541 class, presentation
cleaned up p.cod github repo and updated readme for fsh541 lab submission
started identifying conserved miRNAs for E5 deep dive
27 May 2024
Monday
memorial day
finished methods write up for FSH541 creative product
24 May 2024
Friday
making presentations for fsh541 next week
23 May 2024
Thursday
pubathon, class, lab meeting, meeting w pacific cod project group
22 May 2024
Wednesday
finished functional annotation and enrichment of genome-based analysis
21 May 2024
Tuesday
class and lab
20 May 2024
Monday
classwork for fsh541
17 May 2024
Friday
E5 meeting
Worked most of the day on comparing the shortstack and mirdeep2 outputs for E5 deepdive
16 May 2024
Thursday
class (FSH541) – teaching an ncRNA lesson! Lesson plan here
lab meeting – preparing for open house this weekend!
generated summaries and visualizations of shortstack outputs for E5 deep dive
15 May 2024
Wednesday
14 May 2024
Tuesday
Union picketing
class (FSH541)
union sit in & prep for teaching class on thursday
13 May 2024
Monday
Finally did monthly goals and got back on making daily log entries
met with Laura about cod project, discussed possible alternate directions given the poor methylation DNA extractions; different analysis avenues after using HISAT2/featureCounts
realized that I never downloaded the read data for sample 92, and neither did Laura, so now that Owl is dead we’re not sure how to access it. Reached out to Sam about it (github issue)
classwork for fish541. Also need to finish lesson planning for Thursday