Venkataraman et al. 2024 exposed Eastern oysters (Crassostrea virginica) to ocean acidification treatments and examined the interplay between resultant differential methylation and differential gene expression.
In ceasmallr, we build on this work by evaluating the heritability of this environmentally-induced differential methylation in C. virginica. See project details and current status at the project Github, linked below!
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Sep 23, 2026 | Rerunning MACAU with SNP relatedness matrix | ceasmallr | 60 min |
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Sep 22, 2026 | Calling SNPs with BS-Snper | ceasmallr | 6 min |
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Sep 16, 2026 | Implementing MACAU | ceasmallr | 58 min |
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Sep 15, 2026 | Details of MACAU usage and functionality | ceasmallr | 3 min |
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Sep 9, 2026 | Rerunning offspring DSS with all samples | ceasmallr | 1 min |
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Sep 9, 2026 | Details of DSS functionality | ceasmallr | 3 min |
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Sep 8, 2026 | Shared DMLs on IGV | ceasmallr | 2 min |
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Sep 8, 2026 | Lit review: how to statistically test for inheritance | ceasmallr | 7 min |
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Sep 4, 2026 | Incorporating parental data: parent DSS | ceasmallr | 55 min |
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Sep 3, 2026 | Incorporating parental data: bed check | ceasmallr | 6 min |
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Aug 31, 2026 | Merging the two repos | ceasmallr | 4 min |
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Aug 27, 2026 | Getting back to ceasmallr: DSS | ceasmallr | 7 min |
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Aug 7, 2025 | Summary of completed ceasmallr work | ceasmallr | 3 min |
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